197inline namespace literals
213constexpr aa10murphy operator""_aa10murphy(
char const c)
noexcept
234 for (
size_t i = 0; i < n; ++i)
235 r[i].assign_char(s[i]);
Provides seqan3::aminoacid_alphabet.
Provides seqan3::aminoacid_base.
The reduced Murphy amino acid alphabet..
Definition: aa10murphy.hpp:82
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition: aa10murphy.hpp:120
constexpr aa10murphy() noexcept=default
Defaulted.
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition: aa10murphy.hpp:111
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition: aa10murphy.hpp:114
friend base_t
Befriend seqan3::aminoacid_base.
Definition: aa10murphy.hpp:88
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition: aa10murphy.hpp:128
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:163
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:199
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition: alphabet_base.hpp:261
A CRTP-base that refines seqan3::alphabet_base and is used by the amino acids.
Definition: aminoacid_base.hpp:32
alphabet_base< aa10murphy, size, char > base_t
Type of the base class.
Definition: aminoacid_base.hpp:35
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:83