77 constexpr dna3bs() noexcept = default;
179inline namespace literals
196constexpr dna3bs operator""_dna3bs(
char const c)
noexcept
215 for (
size_t i = 0; i < n; ++i)
216 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:163
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:199
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition: alphabet_base.hpp:261
The three letter reduced DNA alphabet for bisulfite sequencing mode (A,G,T(=C))..
Definition: dna3bs.hpp:61
friend base_t
Befriend seqan3::nucleotide_base.
Definition: dna3bs.hpp:67
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition: dna3bs.hpp:120
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition: dna3bs.hpp:89
static constexpr rank_type rank_complement_table[alphabet_size]
The rank complement table.
Definition: dna3bs.hpp:92
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition: dna3bs.hpp:105
constexpr dna3bs() noexcept=default
Defaulted.
static constexpr rank_type rank_complement(rank_type const rank)
Returns the complement by rank.
Definition: dna3bs.hpp:99
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition: dna3bs.hpp:111
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:43
alphabet_base< dna3bs, size, char > base_t
Type of the base class.
Definition: nucleotide_base.hpp:46
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:83
Provides seqan3::nucleotide_base.