69 constexpr dna5() noexcept = default;
70 constexpr
dna5(
dna5 const &) noexcept = default;
72 constexpr
dna5 & operator=(
dna5 const &) noexcept = default;
73 constexpr
dna5 & operator=(
dna5 &&) noexcept = default;
74 ~
dna5() noexcept = default;
86 constexpr
dna5(t const & r) noexcept
108 return rank_complement_table[rank];
114 return rank_to_char_table[rank];
121 return char_to_rank_table[
static_cast<index_t
>(chr)];
136 ret[rank_to_char_table[rnk]] = rnk;
137 ret[
to_lower(rank_to_char_table[rnk])] = rnk;
165inline namespace literals
182constexpr dna5 operator""_dna5(
char const c)
noexcept
201 for (
size_t i = 0; i < n; ++i)
202 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:163
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition: alphabet_base.hpp:80
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:199
std::conditional_t< std::same_as< char_t, void >, char, char_t > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition: alphabet_base.hpp:72
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition: alphabet_base.hpp:187
The five letter DNA alphabet of A,C,G,T and the unknown character N..
Definition: dna5.hpp:51
constexpr dna5() noexcept=default
Defaulted.
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:43
The five letter RNA alphabet of A,C,G,U and the unknown character N..
Definition: rna5.hpp:49
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:83
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.